PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01088680G0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 219aa    MW: 23015.6 Da    PI: 5.6367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01088680G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1853102255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PH01088680G0010  53 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 102
                      69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-3753116IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2253111IPR016177DNA-binding domain
PfamPF008471.8E-1253102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3253111IPR001471AP2/ERF domain
PROSITE profilePS5103222.99853110IPR001471AP2/ERF domain
PRINTSPR003679.3E-115465IPR001471AP2/ERF domain
CDDcd000186.56E-3254112No hitNo description
PRINTSPR003679.3E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGAMEDCSSG SEPTTSSSAE VPASPPSPTA TSTASSSNAA KKKRPRKDGH HPTYRGVRMR  60
SWGKWVSEIR EPRKKSRIWL GTFATAEMAA RAHDVAALAI KGRAAHLNFP DLAHELPRPA  120
TAAPKDVQAA AALAAAADFP PSANAGVNNP DPSDASVGSA SPPADTTDEA LFDLPDLFLD  180
LRYGPPSCQL SCASSWDDDV AFTGAGVFRL EEPLLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1549110363ATERF1
3gcc_A9e-1549110363ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076621e-130AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAK1088301e-130AK108830.1 Oryza sativa Japonica Group cDNA clone:002-151-G03, full insert sequence.
GenBankAP0050061e-130AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0052891e-130AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149581e-130AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582791e-130AY258279.1 Oryza sativa (japonica cultivar-group) CR102 putative AP2 domain-containing protein gene, complete cds.
GenBankAY3460941e-130AY346094.1 Oryza sativa AP2 domain-containing protein Rap211 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624298.19e-83PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ72e-54ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLQ3T5P21e-105Q3T5P2_HORVD; HvCBF7
STRINGMLOC_3095.11e-105(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-39ERF family protein